IL_8VVV_108
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8VVV|1|5|A|3669, 8VVV|1|5|U|3685, 8VVV|1|5|C|3689
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_108 not in the Motif Atlas
- Geometric match to IL_8P9A_311
- Geometric discrepancy: 0.0916
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VVV|1|5|C|3666
8VVV|1|5|G|3667
8VVV|1|5|A|3668
8VVV|1|5|A|3669
8VVV|1|5|G|3670
8VVV|1|5|G|3671
*
8VVV|1|5|U|3683
8VVV|1|5|G|3684
8VVV|1|5|U|3685
8VVV|1|5|U|3686
8VVV|1|5|G|3687
8VVV|1|5|A|3688
8VVV|1|5|C|3689
8VVV|1|5|G|3690
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain p
- eL43
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