IL_8VVV_113

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_113 not in the Motif Atlas

Geometric match to IL_8CRE_093

Geometric discrepancy: 0.163

The information below is about IL_8CRE_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8VVV|1|5|PSU|3721
8VVV|1|5|C|3722
8VVV|1|5|A|3723
8VVV|1|5|A2M|3724
8VVV|1|5|A|3725
8VVV|1|5|G|3726
8VVV|1|5|U|3727
*
8VVV|1|5|A|3738
8VVV|1|5|A|3739
8VVV|1|5|U|3740
8VVV|1|5|G|3741
8VVV|1|5|A|3742
8VVV|1|5|A|3743
8VVV|1|5|G|3744

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain i

eL36