IL_8VVV_128

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8VVV|1|5|C|4355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_128 not in the Motif Atlas

Geometric match to IL_8P9A_328

Geometric discrepancy: 0.2333

The information below is about IL_8P9A_328

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8VVV|1|5|G|4353
8VVV|1|5|A|4354
8VVV|1|5|C|4355
8VVV|1|5|C|4356
*
8VVV|1|5|G|4370
8VVV|1|5|C|4371

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain Q

eL18

Chain a

uL15

Chain o

eL42