IL_8VVV_133

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GUG(A2M)G

Length

8 nucleotides

Bulged bases

8VVV|1|5|G|4528, 8VVV|1|5|A2M|4529

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_133 not in the Motif Atlas

Geometric match to IL_8CRE_116

Geometric discrepancy: 0.0879

The information below is about IL_8CRE_116

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8VVV|1|5|C|4462
8VVV|1|5|U|4463
8VVV|1|5|C|4464
*
8VVV|1|5|G|4526
8VVV|1|5|U|4527
8VVV|1|5|G|4528
8VVV|1|5|A2M|4529
8VVV|1|5|G|4530

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

L23