IL_8VVV_148

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8VVV|1|5|A|4714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_148 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2288

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VVV|1|5|G|4686
8VVV|1|5|A|4687
8VVV|1|5|U|4688
8VVV|1|5|U|4689
8VVV|1|5|A|4690
8VVV|1|5|U|4691
*
8VVV|1|5|A|4711
8VVV|1|5|G|4712
8VVV|1|5|A|4713
8VVV|1|5|A|4714
8VVV|1|5|U|4715
8VVV|1|5|C|4716

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40