IL_8VVV_152

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_152 not in the Motif Atlas

Geometric match to IL_4XW0_002

Geometric discrepancy: 0.1412

The information below is about IL_4XW0_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VVV|1|5|U|4891
8VVV|1|5|C|4892
8VVV|1|5|C|4893
8VVV|1|5|C|4894
*
8VVV|1|5|G|4937
8VVV|1|5|U|4938
8VVV|1|5|C|4939
8VVV|1|5|A|4940

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

L6