IL_8VVV_155

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_155 not in the Motif Atlas

Geometric match to IL_8CRE_135

Geometric discrepancy: 0.1709

The information below is about IL_8CRE_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8VVV|1|5|U|4978
8VVV|1|5|U|4979
8VVV|1|5|C|4980
8VVV|1|5|G|4981
*
8VVV|1|5|C|4989
8VVV|1|5|C|4990
8VVV|1|5|U|4991
8VVV|1|5|G|4992

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31