IL_8VVV_180

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VVV|1|9|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_180 not in the Motif Atlas

Geometric match to IL_8CRE_400

Geometric discrepancy: 0.1454

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

8VVV|1|9|G|145
8VVV|1|9|G|146
8VVV|1|9|A|147
8VVV|1|9|U|148
8VVV|1|9|A|149
8VVV|1|9|A|150
8VVV|1|9|C|151
*
8VVV|1|9|G|167
8VVV|1|9|C|168
8VVV|1|9|U|169
8VVV|1|9|A|170
8VVV|1|9|A|171
8VVV|1|9|U|172
8VVV|1|9|A|173
8VVV|1|9|C|174

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain W

uL24

Chain YY

eS24