IL_8VVV_197

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_197 not in the Motif Atlas

Geometric match to IL_8CRE_418

Geometric discrepancy: 0.1553

The information below is about IL_8CRE_418

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02511.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

2

Unit IDs

8VVV|1|9|G|563
8VVV|1|9|A|564
8VVV|1|9|G|565
*
8VVV|1|9|C|585
8VVV|1|9|G|586
8VVV|1|9|A|587
8VVV|1|9|G|588
8VVV|1|9|G|589
8VVV|1|9|A|590
8VVV|1|9|U|591
8VVV|1|9|C|592

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain ee

eS30