IL_8VVV_198

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_198 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.2447

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VVV|1|9|U|566
8VVV|1|9|C|567
8VVV|1|9|C|568
8VVV|1|9|A|569
*
8VVV|1|9|U|581
8VVV|1|9|U|582
8VVV|1|9|A|583
8VVV|1|9|A|584

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain YY

eS24