IL_8VVV_209

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_209 not in the Motif Atlas

Geometric match to IL_8P9A_412

Geometric discrepancy: 0.1277

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

8VVV|1|9|A|802
8VVV|1|9|C|803
*
8VVV|1|9|G|860
8VVV|1|9|A|861
8VVV|1|9|A|862
8VVV|1|9|U|863

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

eS7

Chain LL

uS17

Chain WW

uS8