IL_8VVV_217

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8VVV|1|9|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_217 not in the Motif Atlas

Geometric match to IL_8CRE_434

Geometric discrepancy: 0.103

The information below is about IL_8CRE_434

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVV|1|9|C|931
8VVV|1|9|G|932
8VVV|1|9|G|933
8VVV|1|9|G|934
8VVV|1|9|G|935
*
8VVV|1|9|C|1007
8VVV|1|9|A|1008
8VVV|1|9|A|1009
8VVV|1|9|G|1010

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

S3A

Chain NN

uS15

Chain aa

eS26

Chain c

eL30