IL_8VVV_219

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8VVV|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_219 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.2461

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

8VVV|1|9|G|952
8VVV|1|9|C|953
8VVV|1|9|U|954
8VVV|1|9|A|955
8VVV|1|9|G|956
*
8VVV|1|9|C|967
8VVV|1|9|U|968
8VVV|1|9|U|969
8VVV|1|9|G|970
8VVV|1|9|G|971
8VVV|1|9|A|972
8VVV|1|9|C|973
8VVV|1|9|C|974

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

S3A

Chain OO

uS11