IL_8VVV_224

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_224 not in the Motif Atlas

Geometric match to IL_8P9A_401

Geometric discrepancy: 0.1583

The information below is about IL_8P9A_401

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8VVV|1|9|G|1108
8VVV|1|9|C|1109
8VVV|1|9|G|1110
*
8VVV|1|9|C|1123
8VVV|1|9|C|1124

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain BB

S3A

Chain RR

eS17

Chain bb

eS27