IL_8VVV_231

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_231 not in the Motif Atlas

Geometric match to IL_5MWI_003

Geometric discrepancy: 0.1309

The information below is about IL_5MWI_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVV|1|9|G|1270
8VVV|1|9|C|1271
8VVV|1|9|C|1272
*
8VVV|1|9|G|1510
8VVV|1|9|U|1511
8VVV|1|9|C|1512

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

eS10

Chain dd

uS14

Chain ff

eS31