IL_8VVV_243

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

8VVV|1|9|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_243 not in the Motif Atlas

Geometric match to IL_8P9A_419

Geometric discrepancy: 0.3528

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVV|1|9|C|1395
8VVV|1|9|A|1396
8VVV|1|9|U|1397
8VVV|1|9|G|1398
8VVV|1|9|C|1399
*
8VVV|1|9|G|1447
8VVV|1|9|A|1448
8VVV|1|9|G|1449
8VVV|1|9|G|1450

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

uS3

Chain QQ

uS9

Chain RR

eS17

Chain UU

uS10

Chain gg

RACK1