IL_8VVV_244

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8VVV|1|9|C|1403, 8VVV|1|9|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_244 not in the Motif Atlas

Geometric match to IL_8CRE_481

Geometric discrepancy: 0.197

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

8VVV|1|9|A|1402
8VVV|1|9|C|1403
8VVV|1|9|U|1404
8VVV|1|9|A|1405
*
8VVV|1|9|U|1441
8VVV|1|9|U|1442
8VVV|1|9|C|1443
8VVV|1|9|U|1444

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10