IL_8VVV_254
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8VVV|1|9|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_254 not in the Motif Atlas
- Geometric match to IL_8BH9_001
- Geometric discrepancy: 0.3765
- The information below is about IL_8BH9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VVV|1|9|C|1708
8VVV|1|9|G|1709
8VVV|1|9|C|1710
8VVV|1|9|U|1711
*
8VVV|1|9|A|1822
8VVV|1|9|A|1823
8VVV|1|9|A|1824
8VVV|1|9|A|1825
8VVV|1|9|G|1826
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain XX
- uS12
- Chain n
- eL41
- Chain v
- eukaryotic elongation factor 2
Coloring options: