IL_8VWQ_147

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8VWQ|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VWQ_147 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.1026

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8VWQ|1|2|U|684
8VWQ|1|2|G|685
8VWQ|1|2|U|686
8VWQ|1|2|A|687
8VWQ|1|2|G|688
*
8VWQ|1|2|C|699
8VWQ|1|2|G|700
8VWQ|1|2|U|701
8VWQ|1|2|A|702
8VWQ|1|2|G|703
8VWQ|1|2|A|704
8VWQ|1|2|G|705
8VWQ|1|2|A|706

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11