IL_8W51_070

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8W51|1|A|A|1801, 8W51|1|A|C|1816, 8W51|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W51_070 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0571

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8W51|1|A|U|1798
8W51|1|A|G|1799
8W51|1|A|C|1800
8W51|1|A|A|1801
8W51|1|A|A|1802
8W51|1|A|A|1803
8W51|1|A|C|1804
*
8W51|1|A|G|1813
8W51|1|A|G|1814
8W51|1|A|A|1815
8W51|1|A|C|1816
8W51|1|A|G|1817
8W51|1|A|U|1818
8W51|1|A|A|1819
8W51|1|A|U|1820
8W51|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2