IL_8W51_104

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8W51|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8W51_104 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0716

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8W51|1|A|C|2636
8W51|1|A|U|2637
8W51|1|A|G|2638
8W51|1|A|A|2639
8W51|1|A|G|2640
*
8W51|1|A|C|2774
8W51|1|A|G|2775
8W51|1|A|A|2776
8W51|1|A|G|2777
8W51|1|A|A|2778
8W51|1|A|U|2779
8W51|1|A|G|2780
8W51|1|A|A|2781
8W51|1|A|G|2782

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13