IL_8WHX_163

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAG*CGCAGAUA

Length

13 nucleotides

Bulged bases

8WHX|1|a|A|682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_163 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.3079

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8WHX|1|a|U|664
8WHX|1|a|G|665
8WHX|1|a|U|666
8WHX|1|a|A|667
8WHX|1|a|G|668
*
8WHX|1|a|C|679
8WHX|1|a|G|680
8WHX|1|a|C|681
8WHX|1|a|A|682
8WHX|1|a|G|683
8WHX|1|a|A|684
8WHX|1|a|U|685
8WHX|1|a|A|686

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S11