IL_8WHY_012

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAG*UGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_012 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1433

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

8WHY|1|A|U|374
8WHY|1|A|A|375
8WHY|1|A|G|376
*
8WHY|1|A|U|425
8WHY|1|A|G|426
8WHY|1|A|A|427
8WHY|1|A|A|428
8WHY|1|A|A|429

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L24