IL_8WHY_021

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8WHY|1|A|G|916, 8WHY|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_021 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1395

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8WHY|1|A|G|789
8WHY|1|A|A|790
8WHY|1|A|A|791
8WHY|1|A|G|792
8WHY|1|A|C|793
*
8WHY|1|A|G|914
8WHY|1|A|U|915
8WHY|1|A|G|916
8WHY|1|A|A|917
8WHY|1|A|U|918
8WHY|1|A|A|919
8WHY|1|A|G|920
8WHY|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15