IL_8WHY_026
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8WHY|1|A|G|891, 8WHY|1|A|A|903, 8WHY|1|A|A|904
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WHY_026 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.0504
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8WHY|1|A|G|890
8WHY|1|A|G|891
8WHY|1|A|G|892
*
8WHY|1|A|C|902
8WHY|1|A|A|903
8WHY|1|A|A|904
8WHY|1|A|U|905
8WHY|1|A|C|906
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L2
- Chain V
- 50S ribosomal protein L22
Coloring options: