IL_8WHY_036

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGC*GUUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_036 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2543

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8WHY|1|A|G|996
8WHY|1|A|G|997
8WHY|1|A|G|998
8WHY|1|A|C|999
*
8WHY|1|A|G|1008
8WHY|1|A|U|1009
8WHY|1|A|U|1010
8WHY|1|A|A|1011
8WHY|1|A|C|1012

Current chains

Chain A

23S rRNA

Nearby chains