IL_8WHY_042
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAGUG*CUCAAG
- Length
- 13 nucleotides
- Bulged bases
- 8WHY|1|A|C|1260, 8WHY|1|A|A|1262
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WHY_042 not in the Motif Atlas
- Geometric match to IL_4V9F_040
- Geometric discrepancy: 0.0765
- The information below is about IL_4V9F_040
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
8WHY|1|A|C|1136
8WHY|1|A|U|1137
8WHY|1|A|A|1138
8WHY|1|A|A|1139
8WHY|1|A|G|1140
8WHY|1|A|U|1141
8WHY|1|A|G|1142
*
8WHY|1|A|C|1258
8WHY|1|A|U|1259
8WHY|1|A|C|1260
8WHY|1|A|A|1261
8WHY|1|A|A|1262
8WHY|1|A|G|1263
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L6
- Chain M
- 50S ribosomal protein L13
Coloring options: