IL_8WHY_064

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AG*CAUAUAU

Length

9 nucleotides

Bulged bases

8WHY|1|A|U|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_064 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.4724

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8WHY|1|A|A|1702
8WHY|1|A|G|1703
*
8WHY|1|A|C|1726
8WHY|1|A|A|1727
8WHY|1|A|U|1728
8WHY|1|A|A|1729
8WHY|1|A|U|1730
8WHY|1|A|A|1731
8WHY|1|A|U|1732

Current chains

Chain A

23S rRNA

Nearby chains