IL_8WHY_109

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8WHY|1|A|G|2800, 8WHY|1|A|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_109 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0944

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8WHY|1|A|C|2734
8WHY|1|A|U|2735
8WHY|1|A|C|2736
*
8WHY|1|A|G|2798
8WHY|1|A|C|2799
8WHY|1|A|G|2800
8WHY|1|A|A|2801
8WHY|1|A|G|2802

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain F

50S ribosomal protein L3