IL_8WHY_115

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_115 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.2732

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8WHY|1|A|C|2876
8WHY|1|A|U|2877
8WHY|1|A|A|2878
8WHY|1|A|G|2879
8WHY|1|A|U|2880
8WHY|1|A|A|2881
8WHY|1|A|C|2882
*
8WHY|1|A|G|2887
8WHY|1|A|G|2888
8WHY|1|A|A|2889
8WHY|1|A|C|2890
8WHY|1|A|C|2891
8WHY|1|A|G|2892

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6