IL_8WHY_135

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

8WHY|1|A|G|2388, 8WHY|1|A|U|2390, 8WHY|1|A|U|2395

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_135 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.3414

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

8WHY|1|A|G|2347
8WHY|1|A|G|2348
8WHY|1|A|A|2349
8WHY|1|A|G|2350
8WHY|1|A|A|2351
*
8WHY|1|A|U|2383
8WHY|1|A|C|2384
8WHY|1|A|G|2385
8WHY|1|A|U|2386
8WHY|1|A|U|2387
8WHY|1|A|G|2388
8WHY|1|A|U|2389
8WHY|1|A|U|2390
8WHY|1|A|G|2391
8WHY|1|A|A|2392
8WHY|1|A|A|2393
8WHY|1|A|A|2394
8WHY|1|A|U|2395
8WHY|1|A|A|2396
8WHY|1|A|C|2397

Current chains

Chain A

23S rRNA

Nearby chains