IL_8WI7_182

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_182 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1097

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8WI7|1|a|C|1285
8WI7|1|a|G|1286
8WI7|1|a|G|1287
8WI7|1|a|A|1288
8WI7|1|a|U|1289
8WI7|1|a|C|1290
*
8WI7|1|a|G|1311
8WI7|1|a|U|1312
8WI7|1|a|G|1313
8WI7|1|a|A|1314
8WI7|1|a|A|1315
8WI7|1|a|G|1316

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S13