IL_8WI9_056

3D structure

PDB id

8WI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI9_056 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1097

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8WI9|1|a|C|1285
8WI9|1|a|G|1286
8WI9|1|a|G|1287
8WI9|1|a|A|1288
8WI9|1|a|U|1289
8WI9|1|a|C|1290
*
8WI9|1|a|G|1311
8WI9|1|a|U|1312
8WI9|1|a|G|1313
8WI9|1|a|A|1314
8WI9|1|a|A|1315
8WI9|1|a|G|1316

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S13