IL_8WID_024
3D structure
- PDB id
- 8WID (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8WID|1|a|A|512, 8WID|1|a|U|514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WID_024 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.3161
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8WID|1|a|G|495
8WID|1|a|U|496
8WID|1|a|G|497
8WID|1|a|C|498
8WID|1|a|C|499
8WID|1|a|A|500
8WID|1|a|G|501
*
8WID|1|a|C|508
8WID|1|a|G|509
8WID|1|a|G|510
8WID|1|a|U|511
8WID|1|a|A|512
8WID|1|a|A|513
8WID|1|a|U|514
8WID|1|a|A|515
8WID|1|a|C|516
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
- Chain w
- Ribosome hibernation promotion factor RafH
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