IL_8WRC_048

3D structure

PDB id

8WRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-Resolved Ambient Temperature Kineto-Crystallographic Structure of Initiation Factor in Complex with Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.59 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

8WRC|1|A|U|1257, 8WRC|1|A|U|1278, 8WRC|1|A|A|1280, 8WRC|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WRC_048 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.5139

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8WRC|1|A|G|1255
8WRC|1|A|A|1256
8WRC|1|A|U|1257
8WRC|1|A|G|1258
*
8WRC|1|A|C|1277
8WRC|1|A|U|1278
8WRC|1|A|A|1279
8WRC|1|A|A|1280
8WRC|1|A|U|1281
8WRC|1|A|C|1282

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z