IL_8WV1_002

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

8WV1|1|A|G|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_002 not in the Motif Atlas

Homologous match to IL_9DFE_004

Geometric discrepancy: 0.2219

The information below is about IL_9DFE_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

8WV1|1|A|G|80
8WV1|1|A|G|81
8WV1|1|A|G|82
8WV1|1|A|A|83
8WV1|1|A|G|84
*
8WV1|1|A|C|96
8WV1|1|A|G|97
8WV1|1|A|U|98
8WV1|1|A|G|99
8WV1|1|A|G|100
8WV1|1|A|A|101
8WV1|1|A|U|102
8WV1|1|A|C|103

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL24

Chain X

Large ribosomal subunit protein uL29