IL_8WV1_005

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_005 not in the Motif Atlas

Homologous match to IL_9DFE_007

Geometric discrepancy: 0.1536

The information below is about IL_9DFE_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8WV1|1|A|U|228
8WV1|1|A|G|229
8WV1|1|A|A|230
8WV1|1|A|G|231
8WV1|1|A|U|232
8WV1|1|A|A|233
8WV1|1|A|G|234
*
8WV1|1|A|C|242
8WV1|1|A|G|243
8WV1|1|A|A|244
8WV1|1|A|A|245
8WV1|1|A|A|246
8WV1|1|A|G|247

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain K

50S ribosomal protein L15