IL_8WV1_021
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_021 not in the Motif Atlas
- Homologous match to IL_7A0S_111
- Geometric discrepancy: 0.1935
- The information below is about IL_7A0S_111
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.5
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8WV1|1|A|U|905
8WV1|1|A|G|906
8WV1|1|A|U|907
8WV1|1|A|A|908
8WV1|1|A|G|909
*
8WV1|1|A|C|961
8WV1|1|A|G|962
8WV1|1|A|A|963
8WV1|1|A|A|964
8WV1|1|A|G|965
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L16
- Chain V
- Large ribosomal subunit protein bL27
- Chain Y
- 50S ribosomal protein L30
Coloring options: