IL_8WV1_029
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GCUAAG*CGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 8WV1|1|A|A|1202
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_029 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.2292
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8WV1|1|A|G|1043
8WV1|1|A|C|1044
8WV1|1|A|U|1045
8WV1|1|A|A|1046
8WV1|1|A|A|1047
8WV1|1|A|G|1048
*
8WV1|1|A|C|1199
8WV1|1|A|G|1200
8WV1|1|A|A|1201
8WV1|1|A|A|1202
8WV1|1|A|G|1203
8WV1|1|A|C|1204
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain P
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L21
- Chain Y
- 50S ribosomal protein L30
Coloring options: