IL_8WV1_042

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CCUAAG*CGAAGG

Length

12 nucleotides

Bulged bases

8WV1|1|A|A|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_042 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2663

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8WV1|1|A|C|1396
8WV1|1|A|C|1397
8WV1|1|A|U|1398
8WV1|1|A|A|1399
8WV1|1|A|A|1400
8WV1|1|A|G|1401
*
8WV1|1|A|C|1422
8WV1|1|A|G|1423
8WV1|1|A|A|1424
8WV1|1|A|A|1425
8WV1|1|A|G|1426
8WV1|1|A|G|1427

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2