IL_8WV1_052

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

UAGG*CCG

Length

7 nucleotides

Bulged bases

8WV1|1|A|A|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_052 not in the Motif Atlas

Geometric match to IL_8C3A_468

Geometric discrepancy: 0.3962

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8WV1|1|A|U|1535
8WV1|1|A|A|1536
8WV1|1|A|G|1537
8WV1|1|A|G|1538
*
8WV1|1|A|C|1544
8WV1|1|A|C|1545
8WV1|1|A|G|1546

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2