IL_8WV1_061

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

8WV1|1|A|C|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_061 not in the Motif Atlas

Homologous match to IL_9DFE_071

Geometric discrepancy: 0.187

The information below is about IL_9DFE_071

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

8WV1|1|A|C|1868
8WV1|1|A|C|1869
8WV1|1|A|G|1870
8WV1|1|A|G|1871
*
8WV1|1|A|C|1924
8WV1|1|A|G|1925

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Large subunit ribosomal RNA; LSU rRNA