IL_8WV1_087
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 8WV1|1|A|G|2793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_087 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.1374
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8WV1|1|A|U|2648
8WV1|1|A|U|2649
8WV1|1|A|G|2650
8WV1|1|A|A|2651
8WV1|1|A|G|2652
*
8WV1|1|A|C|2787
8WV1|1|A|A|2788
8WV1|1|A|A|2789
8WV1|1|A|G|2790
8WV1|1|A|A|2791
8WV1|1|A|U|2792
8WV1|1|A|G|2793
8WV1|1|A|A|2794
8WV1|1|A|G|2795
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L13
Coloring options: