IL_8WV1_143
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_143 not in the Motif Atlas
- Homologous match to IL_9DFE_048
- Geometric discrepancy: 0.1731
- The information below is about IL_9DFE_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8WV1|1|a|A|1308
8WV1|1|a|U|1309
8WV1|1|a|G|1310
8WV1|1|a|A|1311
8WV1|1|a|G|1312
8WV1|1|a|U|1313
8WV1|1|a|A|1314
8WV1|1|a|A|1315
*
8WV1|1|a|U|2033
8WV1|1|a|G|2034
8WV1|1|a|A|2035
8WV1|1|a|A|2036
8WV1|1|a|A|2037
8WV1|1|a|U|2038
8WV1|1|a|U|2039
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain e
- 50S ribosomal protein L4
- Chain r
- 50S ribosomal protein L22
Coloring options: