IL_8WV1_162

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8WV1|1|a|G|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_162 not in the Motif Atlas

Homologous match to IL_9DFE_068

Geometric discrepancy: 0.1668

The information below is about IL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8WV1|1|a|C|1733
8WV1|1|a|G|1734
8WV1|1|a|U|1735
8WV1|1|a|A|1736
8WV1|1|a|A|1737
8WV1|1|a|C|1738
*
8WV1|1|a|G|1743
8WV1|1|a|G|1744
8WV1|1|a|A|1745
8WV1|1|a|G|1746
8WV1|1|a|A|1747
8WV1|1|a|A|1748
8WV1|1|a|G|1749

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2