IL_8WV1_171
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 8WV1|1|a|A|1960, 8WV1|1|a|U|1966, 8WV1|1|a|U|1985
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_171 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.2082
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
8WV1|1|a|C|1956
8WV1|1|a|G|1957
8WV1|1|a|A|1958
8WV1|1|a|A|1959
8WV1|1|a|A|1960
8WV1|1|a|5MU|1961
8WV1|1|a|U|1962
8WV1|1|a|C|1963
8WV1|1|a|5MC|1964
8WV1|1|a|U|1965
8WV1|1|a|U|1966
8WV1|1|a|G|1967
*
8WV1|1|a|C|1983
8WV1|1|a|5MC|1984
8WV1|1|a|U|1985
8WV1|1|a|G|1986
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L2
Coloring options: