IL_8WV1_185

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

8WV1|1|a|U|2503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_185 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1646

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8WV1|1|a|A|2471
8WV1|1|a|U|2472
8WV1|1|a|C|2473
*
8WV1|1|a|G|2501
8WV1|1|a|G|2502
8WV1|1|a|U|2503
8WV1|1|a|U|2504
8WV1|1|a|U|2505

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16