IL_8WV1_186
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_186 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1749
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8WV1|1|a|C|2478
8WV1|1|a|C|2479
8WV1|1|a|G|2480
8WV1|1|a|A|2481
8WV1|1|a|G|2482
*
8WV1|1|a|C|2492
8WV1|1|a|G|2493
8WV1|1|a|G|2494
8WV1|1|a|C|2495
8WV1|1|a|G|2496
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L25
Coloring options: