IL_8WV1_190

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8WV1|1|a|A|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_190 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.15

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

8WV1|1|a|U|2534
8WV1|1|a|G|2535
*
8WV1|1|a|C|2552
8WV1|1|a|A|2553
8WV1|1|a|A|2554
8WV1|1|a|G|2555

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain i

50S ribosomal protein L13