IL_8WV1_193

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_193 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.173

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8WV1|1|a|C|2664
8WV1|1|a|U|2665
8WV1|1|a|A|2666
8WV1|1|a|G|2667
8WV1|1|a|U|2668
8WV1|1|a|A|2669
8WV1|1|a|C|2670
*
8WV1|1|a|G|2675
8WV1|1|a|G|2676
8WV1|1|a|A|2677
8WV1|1|a|C|2678
8WV1|1|a|C|2679
8WV1|1|a|G|2680

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6